I recently resolved a non-manifold issue as detailed in my answer here, but I have now made another issue for myself which I cannot seem to resolve.
I have been trying to reduce the amount of extraneous loopcut sections by removing parts I don't need and joining them up like in this tutorial but I failed and I decided I would try and use the knife to connect back up my loopcuts like before.
Everything was mostly ok, but then this face for some reason does not accept the knife tool. I can join the vertices following the knife tool but then these vertices are then highlighted under select> Select all by trait>non-manifold
(where they can be selected only as 'vertices' within the option checkboxes).
Here are some screenshots of me trying to use the knife over it: