Firstly, let me say that I am an organic chemistry graduate student and have very minimal experience with Blender itself. I am trying to use the atomic blender add on to make the molecules I have made in our computational software 3D printable.
However, currently I am experiencing trouble viewing the double bonds of any pdb file I import. I am exporting the file from Spartan Student. It is of pentafluorobenzene. The pdb file reads as such:
HEADER
REMARK Spartan Student v7 exported M0001
HETATM 1 H UNK 0001 0.000 2.004 -4.575
HETATM 2 C UNK 0001 0.000 2.004 -3.479
HETATM 3 C UNK 0001 0.000 2.004 -0.707
HETATM 4 C UNK 0001 0.000 0.804 -2.786
HETATM 5 C UNK 0001 0.000 3.205 -2.786
HETATM 6 C UNK 0001 0.000 3.205 -1.400
HETATM 7 C UNK 0001 0.000 0.804 -1.400
HETATM 8 F UNK 0001 0.000 -0.394 -3.478
HETATM 9 F UNK 0001 0.000 -0.394 -0.708
HETATM 10 F UNK 0001 0.000 2.004 0.676
HETATM 11 F UNK 0001 0.000 4.402 -0.708
HETATM 12 F UNK 0001 0.000 4.402 -3.478
CONECT 1 2
CONECT 2 1 5 4
CONECT 3 6 7 10
CONECT 4 7 2 8
CONECT 5 2 6 12
CONECT 6 5 3 11
CONECT 7 3 4 9
CONECT 8 4
CONECT 9 7
CONECT 10 3
CONECT 11 6
CONECT 12 5
END
The structure opens fine, no errors appear. The bond box is checked. Everything is bonded as it should be EXCEPT I cannot see any double bonds. All of the bonds are represented by one stick, regardless of whether they are actually double bonds or single bonds.
Can anyone propose a solution to fix this? Thank you in advance.
