I'm looking to remove the faces from inside one object where another object intersects it.
So, what I'm looking to remove would be the plane inside the small box from the big box. This is just an example, so these objects will be complex. I can't find a boolean that will do this for me in Blender. My friend who has Maya says Boolean Union using Normals instead of faces does exactly this, but with Blender's Union it drops the bottom of the small box (and the plane inside the small box). I would love to be able to do this programmatically as well and without intersecting faces as this will be something that will need to be done a lot in a step of a computational engineering test bed, but I'll try not to get too greedy here. Please let me know if I am unclear on anything.