How to write python to show Toruses from an imported txt file containing center coordinates

Question

I have a question about Python. By the way, I'm beginner of Python and English. I wrote a script showing Toruses from an imported txt file containing center coordinates, but I got an error at

bpy.ops.mesh.primitive_torus_add(location=(int(temp[0]), int(temp[1]), int(temp[2])), rotation=(math.pi/2, math.pi/2, math.pi/2))

I would appreciate if you tell me how to solve it.
Here is my script

import bpy
import math

f=open(r"C:\Users\biostr\AppData\Roaming\Blender Foundation\Blender\2.79\scripts\addons\traj_pro.txt", "r")
lines=[]

for line in f:
    lines.append(line.strip())

for p in lines:
     temp=p.split(',')
     bpy.ops.mesh.primitive_torus_add(location=(int(temp[0]), int(temp[1]), int(temp[2])), rotation=(math.pi/2, math.pi/2, math.pi/2))
     bpy.ops.object.shade_smooth()
     obj=bpy.context.scene.objects.active
     mat=bpy.data.materials.new('Torus')
     mat.diffuse_color=(1.0, 0, 0)
     mat.alpha=0.8
     obj.data.materials.append(mat)

f.close()

Here is some lines from my txt file. Actually, my file is Atom's coordinates, can I make Toruses from this??

CRYST1 65.961 65.961 65.961 90.00 90.00 90.00 P 1 1

ATOM 1 N GLN X 1 32.110 46.350 52.070 1.00 0.00
ATOM 2 H1 GLN X 1 32.470 45.850 52.870 1.00 0.00
ATOM 3 H2 GLN X 1 32.931 46.641 51.559 1.00 0.00
ATOM 4 H3 GLN X 1 31.568 47.112 52.451 1.00 0.00
ATOM 5 CA GLN X 1 31.200 45.480 51.230 1.00 0.00
ATOM 6 HA GLN X 1 30.402 45.041 51.829 1.00 0.00
ATOM 7 CB GLN X 1 30.390 46.250 50.180 1.00 0.00
ATOM 8 HB1 GLN X 1 30.811 46.160 49.179 1.00 0.00

Answer 1

Below is based on on some old code but is still functional for blender 2.79. This will add a tool panel in the view3d viewport that will allow for file selection before generating a generic torus since the atom data only provides x,y,z coordinates as relevant info.

import bpy
from bpy.types import Operator
from bpy.types import Panel


class MeshGenTool():
    @classmethod
    def main(cls, context):
        scene = context.scene
        objs = importFile(scene['File'])
        for obj in objs:
            bpy.ops.mesh.primitive_torus_add(
                location=obj[0])
            MyMesh = context.object
            MyMesh.name = "MyMesh"


class MeshGenButton(bpy.types.Operator):
    """Execute generation"""
    bl_idname = "object.simple_operator"
    bl_label = "Generate"

    @classmethod
    def poll(cls, context):
        scene = context.scene
        filevalid = (scene.File is not "")
        return filevalid is True

    def execute(self, context):
        MeshGenTool.main(context)
        return {'FINISHED'}


def importFile(File):
    obj_loc = ()
    obj_dia = 1
    obj_data = ()
    objs = []
    f = open(File, 'r')
    for line in f:
        if line.startswith('ATOM'):
            words = line.split()
            obj_loc = (float(words[6]), float(words[7]), float(words[8]))
            obj_data = (obj_loc, obj_dia)
            objs.append(obj_data)
    return objs


class VIEW3D_PT_Blank1_Blank2(Panel):
    bl_space_type = 'VIEW_3D'
    bl_region_type = 'TOOLS'
    bl_category = "Import Atom Coords"
    bl_context = "objectmode"
    bl_label = "Import Coords"

    def draw(self, context):
        layout = self.layout
        scene = context.scene
        row = layout.row()
        col = layout.column(align=True)
        col.prop(scene, "File")
        col.operator(
            "object.simple_operator", text="Add items",
            icon='MESH_TORUS')


def register():
    bpy.utils.register_class(VIEW3D_PT_Blank1_Blank2)
    bpy.utils.register_class(MeshGenButton)
    bpy.types.Scene.File = bpy.props.StringProperty(
        name="File",
        description="Path of File to read from",
        default="",
        subtype='FILE_PATH')


def unregister():
    bpy.utils.unregister_class(VIEW3D_PT_Blank1_Blank2)
    bpy.utils.unregister_class(MeshGenButton)
    del bpy.types.Scene.File

if __name__ == "__main__":
    register()