I'm having stack of 2D images with labeled cross-sections, want to fit 3D blood vessel model for the cross-sections having same label across the scans in the stack, similarly for all. Is it possible to do this in Blender?. First image is one out of 777 scans and second image is the view of the vessel in 3D by stacking 777 2D-scans.

  • $\begingroup$ It is quite possible, but I am guessing it will be extremely laborious and require extensive effort. For starters you would gave to trace your section images into something palpable like curves or meshes. You may also use curve objects or skin modifier to trace vessels. Not sure how to keep labels though, manually placing text objects seems unpractical. $\endgroup$ – Duarte Farrajota Ramos Dec 7 '16 at 6:40
  • $\begingroup$ Please edit your question and provide example images of what you currently have, and reference images what you want to achieve. $\endgroup$ – Duarte Farrajota Ramos Dec 7 '16 at 6:40
  • $\begingroup$ related: blender.stackexchange.com/questions/8436/… $\endgroup$ – user1853 Dec 8 '16 at 4:25
  • $\begingroup$ related if you just want to render: blender.stackexchange.com/questions/62110/… $\endgroup$ – Sazerac Dec 8 '16 at 4:30
  • $\begingroup$ But, I want a model of vessel in 3D, but not just the view getting by stacking all the 2D scans. $\endgroup$ – Mohammed Nasar Dec 8 '16 at 4:31

FIJI helps me to get required .obj file from the stack of scans that fixes the problem.

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