First of all thank you for taking the time to read this question. I'm new to Blender, been using it the last week and I'm having great results so far, I've learned most of the basic stuff on both renders.
Since I'm working on a cartoonish project I had this idea, instead of hand painting textures, I'd simply use the Freestyle option and end up with a nice cartoonish texture from baking. After trying it on two projects, it baked successfully but without the freestyle strokes.
So I came to the conclusion it either doesn't work in baking, since it is the last to show up when rendering and only when pressing "F12" not in rendered mode (probably just a childish assumption) or I don't know what to do to get it working.
So how do I bake a texture with Freestyle strokes?
I'm also including some pictures of my scenario, freestyle working fine in final render (F12), but not showing up on baked textures or rendering mode.