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I need to create a consistent model for a Physics Simulation Program.(Comsol)enter image description here Is there any Way to snap these selected Vertices straight onto the Surface? Creating a water-tight closed System? I tried Shrinkwrap and Automerge but both didnt give me good results. Thanks in advance.

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For the purpose I recommend you to use Shrinkwrap modifier which contains a lot of options to snap one object vertex ti another:

Shrinkwrap before Shrinkwrap after

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