I've done a lot of research into the problem, but I'm a blender noob. I have
Removed Doubles Recalculated Normals Removed All Vertex Groups Removed Subsurface Modifier Added the Decimate Planar Modifier Ensured The root is where it needs to be Ensured Positioning for the Mesh and Bones are all set to Zero and Scale to 1
I tried to upload the blend file to Blend Stack exchange but its 80Mb and the max is 30, so I put it on drop box. Thanks for anything you can do to help.
:Edit I uploaded the backup file, the new file is at the right point, sorry and thanks again.