As you can see, I have vertices on top of vertices, I'm trying to delete them using delete doubles but it says there are 0. But they're clearly overlapping perfectly. I set my merge distance to 0 but they still wont delete. I'd rather not manually delete all of them so if you guys could point out what I've done wrong please help.

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    $\begingroup$ Threshold at 0 effectively turns off any effect of the Remove Doubles operator. It should be set to something higher than default 0,001 $\endgroup$ – Mr Zak Jul 13 '18 at 15:09

I didn't realize you needed to select vertices for remove doubles to have an effect. To remove doubles on the whole model, select everything with A first (you may need to press it twice if you have anything selected beforehand).

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    $\begingroup$ Thanks for taking the time to share. I've taken the liberty of editing your answer to add some additional information. If you don't agree with my edits, please feel free to roll them back and/or edit some more. $\endgroup$ – gandalf3 Jul 14 '18 at 6:26

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